User profiles for Shi-jie CHEN

Shi-Jie Chen

University of Missouri-Columbia
Verified email at missouri.edu
Cited by 6473

RNA folding: conformational statistics, folding kinetics, and ion electrostatics

SJ Chen - Annu. Rev. Biophys., 2008 - annualreviews.org
RNA folding is a remarkably complex problem that involves ion-mediated electrostatic
interaction, conformational entropy, base pairing and stacking, and noncanonical interactions. …

Theory and modeling of RNA structure and interactions with metal ions and small molecules

LZ Sun, D Zhang, SJ Chen - Annual review of biophysics, 2017 - annualreviews.org
In addition to continuous rapid progress in RNA structure determination, probing, and biophysical
studies, the past decade has seen remarkable advances in the development of a new …

RNA–ligand molecular docking: Advances and challenges

Y Zhou, Y Jiang, SJ Chen - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
With rapid advances in computer algorithms and hardware, fast and accurate virtual screening
has led to a drastic acceleration in selecting potent small molecules as drug candidates. …

[PDF][PDF] Nucleic acid helix stability: effects of salt concentration, cation valence and size, and chain length

ZJ Tan, SJ Chen - Biophysical journal, 2006 - cell.com
Metal ions play crucial roles in thermal stability and folding kinetics of nucleic acids. For ions
(especially multivalent ions) in the close vicinity of nucleic acid surface, interion correlations …

Causal associations of short and long sleep durations with 12 cardiovascular diseases: linear and nonlinear Mendelian randomization analyses in UK Biobank

…, G Li, HC So, Y Liu, SWH Chau, J Chen… - European Heart …, 2021 - academic.oup.com
Aims Observational studies have suggested strong associations between sleep duration and
many cardiovascular diseases (CVDs), but causal inferences have not been confirmed. We …

Modeling team member characteristics for the formation of a multifunctional team in concurrent engineering

SJ Chen, L Lin - IEEE transactions on Engineering …, 2004 - ieeexplore.ieee.org
In concurrent engineering, project tasks generally involve the establishment of multifunctional
design teams in order to simultaneously consider various activities throughout the entire …

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

…, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen… - Rna, 2012 - rnajournal.cshlp.org
We report the results of a first, collective, blind experiment in RNA three-dimensional (3D)
structure prediction, encompassing three prediction puzzles. The goals are to assess the …

Protein folds vs. protein folding: Differing questions, different challenges

SJ Chen, M Hassan, RL Jernigan… - Proceedings of the …, 2023 - National Acad Sciences
Protein fold prediction using deep-learning artificial intelligence (AI) has transformed the
field of protein structure prediction (1–3). By combining physical and geometric constraints—…

[HTML][HTML] Cas9-specific immune responses compromise local and systemic AAV CRISPR therapy in multiple dystrophic canine models

…, G Yao, NN Yang, CA Gersbach, S Chen… - Nature …, 2021 - nature.com
Adeno-associated virus (AAV)-mediated CRISPR-Cas9 editing holds promise to treat many
diseases. The immune response to bacterial-derived Cas9 has been speculated as a hurdle …

RNA folding energy landscapes

SJ Chen, KA Dill - Proceedings of the National Academy of …, 2000 - National Acad Sciences
Using a statistical mechanical treatment, we study RNA folding energy landscapes. We first
validate the theory by showing that, for the RNA molecules we tested having only secondary …