User profiles for Shi-jie CHEN
Shi-Jie ChenUniversity of Missouri-Columbia Verified email at missouri.edu Cited by 6473 |
RNA folding: conformational statistics, folding kinetics, and ion electrostatics
SJ Chen - Annu. Rev. Biophys., 2008 - annualreviews.org
RNA folding is a remarkably complex problem that involves ion-mediated electrostatic
interaction, conformational entropy, base pairing and stacking, and noncanonical interactions. …
interaction, conformational entropy, base pairing and stacking, and noncanonical interactions. …
Theory and modeling of RNA structure and interactions with metal ions and small molecules
In addition to continuous rapid progress in RNA structure determination, probing, and biophysical
studies, the past decade has seen remarkable advances in the development of a new …
studies, the past decade has seen remarkable advances in the development of a new …
RNA–ligand molecular docking: Advances and challenges
With rapid advances in computer algorithms and hardware, fast and accurate virtual screening
has led to a drastic acceleration in selecting potent small molecules as drug candidates. …
has led to a drastic acceleration in selecting potent small molecules as drug candidates. …
[PDF][PDF] Nucleic acid helix stability: effects of salt concentration, cation valence and size, and chain length
ZJ Tan, SJ Chen - Biophysical journal, 2006 - cell.com
Metal ions play crucial roles in thermal stability and folding kinetics of nucleic acids. For ions
(especially multivalent ions) in the close vicinity of nucleic acid surface, interion correlations …
(especially multivalent ions) in the close vicinity of nucleic acid surface, interion correlations …
Causal associations of short and long sleep durations with 12 cardiovascular diseases: linear and nonlinear Mendelian randomization analyses in UK Biobank
Aims Observational studies have suggested strong associations between sleep duration and
many cardiovascular diseases (CVDs), but causal inferences have not been confirmed. We …
many cardiovascular diseases (CVDs), but causal inferences have not been confirmed. We …
Modeling team member characteristics for the formation of a multifunctional team in concurrent engineering
SJ Chen, L Lin - IEEE transactions on Engineering …, 2004 - ieeexplore.ieee.org
In concurrent engineering, project tasks generally involve the establishment of multifunctional
design teams in order to simultaneously consider various activities throughout the entire …
design teams in order to simultaneously consider various activities throughout the entire …
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction
We report the results of a first, collective, blind experiment in RNA three-dimensional (3D)
structure prediction, encompassing three prediction puzzles. The goals are to assess the …
structure prediction, encompassing three prediction puzzles. The goals are to assess the …
Protein folds vs. protein folding: Differing questions, different challenges
Protein fold prediction using deep-learning artificial intelligence (AI) has transformed the
field of protein structure prediction (1–3). By combining physical and geometric constraints—…
field of protein structure prediction (1–3). By combining physical and geometric constraints—…
[HTML][HTML] Cas9-specific immune responses compromise local and systemic AAV CRISPR therapy in multiple dystrophic canine models
Adeno-associated virus (AAV)-mediated CRISPR-Cas9 editing holds promise to treat many
diseases. The immune response to bacterial-derived Cas9 has been speculated as a hurdle …
diseases. The immune response to bacterial-derived Cas9 has been speculated as a hurdle …
RNA folding energy landscapes
Using a statistical mechanical treatment, we study RNA folding energy landscapes. We first
validate the theory by showing that, for the RNA molecules we tested having only secondary …
validate the theory by showing that, for the RNA molecules we tested having only secondary …