User profiles for Chaochun Wei
Chaochun WeiShanghai Jiao Tong University Verified email at sjtu.edu.cn Cited by 5875 |
[HTML][HTML] Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Here we analyse genetic variation, population structure and diversity among 3,010 diverse
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …
Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice
…, W Hua, Y Mao, X Zhang, X Pang, C Wei… - The ISME …, 2010 - academic.oup.com
Both genetic variations and diet-disrupted gut microbiota can predispose animals to metabolic
syndromes (MS). This study assessed the relative contributions of host genetics and diet …
syndromes (MS). This study assessed the relative contributions of host genetics and diet …
[HTML][HTML] HUPAN: a pan-genome analysis pipeline for human genomes
The human reference genome is still incomplete, especially for those population-specific or
individual-specific regions, which may have important functions. Here, we developed a …
individual-specific regions, which may have important functions. Here, we developed a …
[HTML][HTML] The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
…, M Sohrmann, J Spieth, JE Stajich, C Wei… - PLoS …, 2003 - journals.plos.org
The soil nematodes Caenorhabditis briggsae and Caenorhabditis elegans diverged from a
common ancestor roughly 100 million years ago and yet are almost indistinguishable by eye. …
common ancestor roughly 100 million years ago and yet are almost indistinguishable by eye. …
[HTML][HTML] PaSS: a sequencing simulator for PacBio sequencing
W Zhang, B Jia, C Wei - BMC bioinformatics, 2019 - Springer
Background Third-generation sequencing platforms, such as PacBio sequencing, have been
developed rapidly in recent years. PacBio sequencing generates much longer reads than …
developed rapidly in recent years. PacBio sequencing generates much longer reads than …
Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing
Z Ling, J Kong, P Jia, C Wei, Y Wang, Z Pan, W Huang… - Microbial ecology, 2010 - Springer
Oral microbiota plays a vital role in maintaining the homeostasis of oral cavity. Dental caries
are among the most common oral diseases in children and pathogenic bacteria contribute to …
are among the most common oral diseases in children and pathogenic bacteria contribute to …
Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia
…, ZE Xu, D Yan, S Yang, J Jia, X Kong, Z Wei… - Genome …, 2014 - genome.cshlp.org
The hypoxic environment imposes severe selective pressure on species living at high
altitude. To understand the genetic bases of adaptation to high altitude in dogs, we performed …
altitude. To understand the genetic bases of adaptation to high altitude in dogs, we performed …
[HTML][HTML] More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body
Background Estimating the number of genes in human genome has been long an important
problem in computational biology. With the new conception of considering human as a super…
problem in computational biology. With the new conception of considering human as a super…
ITFP: an integrated platform of mammalian transcription factors
Investigation of transcription factors (TFs) and their downstream regulated genes (targets) is
a significant issue in post-genome era, which can provide a brand new vision for some vital …
a significant issue in post-genome era, which can provide a brand new vision for some vital …
RPAN: rice pan-genome browser for∼ 3000 rice genomes
A pan-genome is the union of the gene sets of all the individuals of a clade or a species and
it provides a new dimension of genome complexity with the presence/absence variations (…
it provides a new dimension of genome complexity with the presence/absence variations (…