User profiles for Chaochun Wei

Chaochun Wei

Shanghai Jiao Tong University
Verified email at sjtu.edu.cn
Cited by 5875

[HTML][HTML] Genomic variation in 3,010 diverse accessions of Asian cultivated rice

…, J Li, RS Hamilton, RA Wing, J Ruan, G Zhang, C Wei… - Nature, 2018 - nature.com
Here we analyse genetic variation, population structure and diversity among 3,010 diverse
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

…, W Hua, Y Mao, X Zhang, X Pang, C Wei… - The ISME …, 2010 - academic.oup.com
Both genetic variations and diet-disrupted gut microbiota can predispose animals to metabolic
syndromes (MS). This study assessed the relative contributions of host genetics and diet …

[HTML][HTML] HUPAN: a pan-genome analysis pipeline for human genomes

…, G Li, H Chen, Z Xiang, Z Zhu, H Zhao, Y Yu, C Wei - Genome biology, 2019 - Springer
The human reference genome is still incomplete, especially for those population-specific or
individual-specific regions, which may have important functions. Here, we developed a …

[HTML][HTML] The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics

…, M Sohrmann, J Spieth, JE Stajich, C Wei… - PLoS …, 2003 - journals.plos.org
The soil nematodes Caenorhabditis briggsae and Caenorhabditis elegans diverged from a
common ancestor roughly 100 million years ago and yet are almost indistinguishable by eye. …

[HTML][HTML] PaSS: a sequencing simulator for PacBio sequencing

W Zhang, B Jia, C Wei - BMC bioinformatics, 2019 - Springer
Background Third-generation sequencing platforms, such as PacBio sequencing, have been
developed rapidly in recent years. PacBio sequencing generates much longer reads than …

Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing

Z Ling, J Kong, P Jia, C Wei, Y Wang, Z Pan, W Huang… - Microbial ecology, 2010 - Springer
Oral microbiota plays a vital role in maintaining the homeostasis of oral cavity. Dental caries
are among the most common oral diseases in children and pathogenic bacteria contribute to …

Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia

…, ZE Xu, D Yan, S Yang, J Jia, X Kong, Z Wei… - Genome …, 2014 - genome.cshlp.org
The hypoxic environment imposes severe selective pressure on species living at high
altitude. To understand the genetic bases of adaptation to high altitude in dogs, we performed …

[HTML][HTML] More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body

X Yang, L Xie, Y Li, C Wei - PloS one, 2009 - journals.plos.org
Background Estimating the number of genes in human genome has been long an important
problem in computational biology. With the new conception of considering human as a super…

ITFP: an integrated platform of mammalian transcription factors

G Zheng, K Tu, Q Yang, Y Xiong, C Wei, L Xie… - …, 2008 - academic.oup.com
Investigation of transcription factors (TFs) and their downstream regulated genes (targets) is
a significant issue in post-genome era, which can provide a brand new vision for some vital …

RPAN: rice pan-genome browser for∼ 3000 rice genomes

…, J Shi, C Wang, J Lu, D Zhang, Z Li, C Wei - Nucleic acids …, 2017 - academic.oup.com
A pan-genome is the union of the gene sets of all the individuals of a clade or a species and
it provides a new dimension of genome complexity with the presence/absence variations (…