RT Journal Article
SR Electronic
T1 Large-scale loss-of-function perturbations reveal a comprehensive epigenetic regulatory network in breast cancer
JF Cancer Biology & Medicine
JO Cancer Biology & Medicine
FD China Anti-Cancer Association
SP 83
OP 103
DO 10.20892/j.issn.2095-3941.2023.0276
VO 21
IS 1
A1 Yumei Wang
A1 Haiyan Wang
A1 Wei Shao
A1 Yuhui Chen
A1 Yu Gui
A1 Chao Hu
A1 Xiaohong Yi
A1 Lijun Huang
A1 Shasha Li
A1 Dong Wang
YR 2024
UL http://www.cancerbiomed.org/content/21/1/83.abstract
AB Objective: Epigenetic abnormalities have a critical role in breast cancer by regulating gene expression; however, the intricate interrelationships and key roles of approximately 400 epigenetic regulators in breast cancer remain elusive. It is important to decipher the comprehensive epigenetic regulatory network in breast cancer cells to identify master epigenetic regulators and potential therapeutic targets.Methods: We employed high-throughput sequencing-based high-throughput screening (HTS2) to effectively detect changes in the expression of 2,986 genes following the knockdown of 400 epigenetic regulators. Then, bioinformatics analysis tools were used for the resulting gene expression signatures to investigate the epigenetic regulations in breast cancer.Results: Utilizing these gene expression signatures, we classified the epigenetic regulators into five distinct clusters, each characterized by specific functions. We discovered functional similarities between BAZ2B and SETMAR, as well as CLOCK and CBX3. Moreover, we observed that CLOCK functions in a manner opposite to that of HDAC8 in downstream gene regulation. Notably, we constructed an epigenetic regulatory network based on the gene expression signatures, which revealed 8 distinct modules and identified 10 master epigenetic regulators in breast cancer.Conclusions: Our work deciphered the extensive regulation among hundreds of epigenetic regulators. The identification of 10 master epigenetic regulators offers promising therapeutic targets for breast cancer treatment.The authors confirm that the data supporting the findings of this study are available within the article.