Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

XO Zhang, R Dong, Y Zhang, JL Zhang, Z Luo… - Genome …, 2016 - genome.cshlp.org
Circular RNAs (circRNAs) derived from back-spliced exons have been widely identified as
being co-expressed with their linear counterparts. A single gene locus can produce multiple …

CIRCpedia v2: an updated database for comprehensive circular RNA annotation and expression comparison

R Dong, XK Ma, GW Li, L Yang - Genomics, Proteomics and …, 2018 - academic.oup.com
Circular RNAs (circRNAs) from back-splicing of exon (s) have been recently identified to be
broadly expressed in eukaryotes, in tissue-and species-specific manners. Although …

[HTML][HTML] Comprehensive identification of internal structure and alternative splicing events in circular RNAs

Y Gao, J Wang, Y Zheng, J Zhang, S Chen… - Nature …, 2016 - nature.com
Although previous studies demonstrated circular RNAs (circRNAs) does not exclusively
comprise mRNA exons, no study has extensively explored their internal structure. By …

circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing

Z Liu, C Tao, S Li, M Du, Y Bai, X Hu, Y Li, J Chen… - elife, 2021 - elifesciences.org
Circular RNAs (circRNAs) act through multiple mechanisms via their sequence features to
fine-tune gene expression networks. Due to overlapping sequences with linear cognates …

CircPro: an integrated tool for the identification of circRNAs with protein-coding potential

X Meng, Q Chen, P Zhang, M Chen - Bioinformatics, 2017 - academic.oup.com
Circular RNAs (circRNAs), a novel class of endogenous RNAs, are widespread in eukaryotic
cells. Emerging roles in diverse biological processes suggest that circRNA is a promising …

[HTML][HTML] CircRNA-derived pseudogenes

R Dong, XO Zhang, Y Zhang, XK Ma, LL Chen, L Yang - Cell research, 2016 - nature.com
Circular RNAs (circRNAs) from pre-mRNA back-splicing have been recently re-discovered
genome-wide in metazoans by taking advantage of RNA deep-sequencing (RNA-seq) of the …

Increased complexity of circRNA expression during species evolution

R Dong, XK Ma, LL Chen, L Yang - RNA biology, 2017 - Taylor & Francis
Circular RNAs (circRNAs) are broadly identified from precursor mRNA (pre-mRNA) back-
splicing across various species. Recent studies have suggested a cell-/tissue-specific …

Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice

CY Ye, X Zhang, Q Chu, C Liu, Y Yu, W Jiang… - RNA biology, 2017 - Taylor & Francis
Circular RNAs (circRNAs) have been identified in diverse eukaryotic species and are
characterized by RNA backsplicing events. Current available methods for circRNA …

CircAST: full-length assembly and quantification of alternatively spliced isoforms in circular RNAs

J Wu, Y Li, C Wang, Y Cui, T Xu, C Wang… - Genomics …, 2019 - academic.oup.com
Circular RNAs (circRNAs), covalently closed continuous RNA loops, are generated from
cognate linear RNAs through back splicing events, and alternative splicing events may …

[HTML][HTML] isoCirc catalogs full-length circular RNA isoforms in human transcriptomes

R Xin, Y Gao, Y Gao, R Wang… - Nature …, 2021 - nature.com
Circular RNAs (circRNAs) have emerged as an important class of functional RNA molecules.
Short-read RNA sequencing (RNA-seq) is a widely used strategy to identify circRNAs …