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Research ArticleResearch Article

A Serum Biomarker Model to Diagnose Pancreatic Cancer Using Proteomic Fingerprint Technology

Chunlin Ge, Ning Ma, Dianbo Yao, Fengming Luan, Chaojun Hu, Yongzhe Li and Yongfeng Liu
Chinese Journal of Clinical Oncology June 2008, 5 (3) 200-205; DOI: https://doi.org/10.1007/s11805-008-0200-6
Chunlin Ge
1The Department of General Surgery, The First Affiliated Hospital of China Medical University, Shenyang 110001, Liaoning Province, China.
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  • For correspondence: chunlinge{at}yahoo.com.cn
Ning Ma
1The Department of General Surgery, The First Affiliated Hospital of China Medical University, Shenyang 110001, Liaoning Province, China.
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Dianbo Yao
1The Department of General Surgery, The First Affiliated Hospital of China Medical University, Shenyang 110001, Liaoning Province, China.
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Fengming Luan
1The Department of General Surgery, The First Affiliated Hospital of China Medical University, Shenyang 110001, Liaoning Province, China.
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Chaojun Hu
2Department of Clinical Laboratory, Peking Union Medical College Hospital, Peking Union Medical College & Chinese Academy of Medical Sciences, Beijing 100730, China.
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Yongzhe Li
2Department of Clinical Laboratory, Peking Union Medical College Hospital, Peking Union Medical College & Chinese Academy of Medical Sciences, Beijing 100730, China.
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Yongfeng Liu
1The Department of General Surgery, The First Affiliated Hospital of China Medical University, Shenyang 110001, Liaoning Province, China.
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    Fig.1.

    Representative spectra of a plasma sample in the range of 2,000 to 10,000 m/z obtained using SELDI-TOF-MS.

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    Fig.2.

    Differential expression of surface-enhanced laser desorption and ionization peak m/z 5705 in the comparison of pancreatic cancer (top 4) and control (bottom 4) sera. Profile shown in peak display (top) and gel view (bottom) mode (Biomarker Wizard 3.0).

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    Fig.3. BPS decision tree model.

    The decision tree detailed the decision-making procedure and sample distribution of the BPS model. Each square is a node, which was labeled by a node number. Blue frames represented parent nodes and red frames represented terminal nodes.

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    Fig.4.

    ROC curve of the decision tree model.

Tables

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    Table 1.

    Clinicopathologic characteristics of the 29 pancreatic cancers.

    StageTumor location
    HeadBody or tail
    I34
    II22
    III86
    IV31
    • View popup
    Table 2.

    Important protein peaks that can be used for comparison of patients with pancreatic cancer and controls selected by BPS.

    Peak (m/z)PScore*
    5705**9.21E-07100
    116921.00E-0594.37
    33199.51E-0472.98
    77622.04E-0369.29
    38182.11E-0568.31
    54792.62E-0568.31
    5318**2.46E-0632.80
    4935**0.00130.99
    79681.00E-0426.12
    24863.75E-0518.17
    80732.04 E-0316.21
    3243**3.02E-059.25
    • Peaks were named by their m/z.

    • ↵* the most important peak was assigned an importance index of 100;

    • ↵** these were the proteins that were selected to construct the decision tree model.

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Cancer Biology and Medicine: 5 (3)
Chinese Journal of Clinical Oncology
Vol. 5, Issue 3
1 Jun 2008
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A Serum Biomarker Model to Diagnose Pancreatic Cancer Using Proteomic Fingerprint Technology
Chunlin Ge, Ning Ma, Dianbo Yao, Fengming Luan, Chaojun Hu, Yongzhe Li, Yongfeng Liu
Chinese Journal of Clinical Oncology Jun 2008, 5 (3) 200-205; DOI: 10.1007/s11805-008-0200-6

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A Serum Biomarker Model to Diagnose Pancreatic Cancer Using Proteomic Fingerprint Technology
Chunlin Ge, Ning Ma, Dianbo Yao, Fengming Luan, Chaojun Hu, Yongzhe Li, Yongfeng Liu
Chinese Journal of Clinical Oncology Jun 2008, 5 (3) 200-205; DOI: 10.1007/s11805-008-0200-6
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Keywords

  • Pancreatic cancer
  • proteomic
  • SELDI–TOF-MS
  • classification model
  • Biomarkers

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